AlignMe
Help/Examples:     

    or have a look at the 

Enter a multiple sequence alignment
with sequences in fasta format

Enter another multiple sequence alignment
with sequences in fasta format

...or upload a file?

...or upload another file?


2) Usage of own or optimized predefined parameters (optional)
    Gap penalties have been systematically tested on 5TM repeat sequences
    using the hydrophobicity scale HWvH with a sliding window of size 13
    and a 0.5 allowed fraction of gaps as input.
   

α-helical membrane proteins

fast ~ 3 sec.
(substitution matrix & hydrophobicity scale)


Usage of own alignment parameters

user defined parameters


         Show detailed alignment parameters!

3) Submission

Enter a E-Mail address if you want to have an E-Mail with your results (not required)